IL_7ZJW_040

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

7ZJW|1|L5|A|843, 7ZJW|1|L5|A|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_040 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2869

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7ZJW|1|L5|A|717
7ZJW|1|L5|C|718
*
7ZJW|1|L5|G|842
7ZJW|1|L5|A|843
7ZJW|1|L5|A|844
7ZJW|1|L5|U|845

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LI

60S ribosomal Protein uL30