IL_7ZJW_048

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCUCG

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|C|1105, 7ZJW|1|L5|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_048 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2637

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7ZJW|1|L5|C|997
7ZJW|1|L5|U|998
7ZJW|1|L5|C|999
*
7ZJW|1|L5|G|1104
7ZJW|1|L5|C|1105
7ZJW|1|L5|U|1106
7ZJW|1|L5|C|1107
7ZJW|1|L5|G|1108

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain Le

60S ribosomal protein L29