3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUC*GCUCG
Length
8 nucleotides
Bulged bases
7ZJW|1|L5|C|1105, 7ZJW|1|L5|U|1106
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_048 not in the Motif Atlas
Geometric match to IL_4TS2_003
Geometric discrepancy: 0.2637
The information below is about IL_4TS2_003
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

7ZJW|1|L5|C|997
7ZJW|1|L5|U|998
7ZJW|1|L5|C|999
*
7ZJW|1|L5|G|1104
7ZJW|1|L5|C|1105
7ZJW|1|L5|U|1106
7ZJW|1|L5|C|1107
7ZJW|1|L5|G|1108

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LI
60S ribosomal Protein uL30
Chain Le
60S ribosomal protein L29

Coloring options:


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