IL_7ZJW_050

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGCGA*UCACGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_050 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3344

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7ZJW|1|L5|G|1005
7ZJW|1|L5|C|1006
7ZJW|1|L5|G|1007
7ZJW|1|L5|C|1008
7ZJW|1|L5|G|1009
7ZJW|1|L5|A|1010
*
7ZJW|1|L5|U|1092
7ZJW|1|L5|C|1093
7ZJW|1|L5|A|1094
7ZJW|1|L5|C|1095
7ZJW|1|L5|G|1096
7ZJW|1|L5|C|1097

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LW

60S ribosomal protein eL21