IL_7ZJW_051

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

7ZJW|1|L5|U|1090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_051 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.3139

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7ZJW|1|L5|C|1011
7ZJW|1|L5|C|1012
*
7ZJW|1|L5|G|1089
7ZJW|1|L5|U|1090
7ZJW|1|L5|G|1091

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LV

60S ribosomal protein eL20

Chain LW

60S ribosomal protein eL21