IL_7ZJW_058

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_058 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1505

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7ZJW|1|L5|C|1386
7ZJW|1|L5|G|1387
7ZJW|1|L5|A|1388
7ZJW|1|L5|G|1389
*
7ZJW|1|L5|C|1405
7ZJW|1|L5|G|1406
7ZJW|1|L5|A|1407
7ZJW|1|L5|G|1408

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LT

60S ribosomal Protein eL18