IL_7ZJW_063

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

7ZJW|1|L5|A|1605, 7ZJW|1|L5|G|1609

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|C|1475
7ZJW|1|L5|C|1476
7ZJW|1|L5|OMG|1477
7ZJW|1|L5|A|1478
7ZJW|1|L5|A2M|1479
7ZJW|1|L5|A|1480
7ZJW|1|L5|G|1481
*
7ZJW|1|L5|C|1603
7ZJW|1|L5|U|1604
7ZJW|1|L5|A|1605
7ZJW|1|L5|G|1606
7ZJW|1|L5|U|1607
7ZJW|1|L5|A|1608
7ZJW|1|L5|G|1609
7ZJW|1|L5|C|1610
7ZJW|1|L5|U|1611
7ZJW|1|L5|G|1612

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LO

60S ribosomal protein eL13

Chain LQ

60S ribosomal protein L15

Chain Ld

60S ribosomal protein L27a

Chain Lm

60S ribosomal protein L37