IL_7ZJW_067

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_067 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0713

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7ZJW|1|L5|G|1541
7ZJW|1|L5|G|1542
7ZJW|1|L5|U|1543
7ZJW|1|L5|C|1544
*
7ZJW|1|L5|G|1560
7ZJW|1|L5|U|1561
7ZJW|1|L5|C|1562

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

60S ribosomal protein L37