IL_7ZJW_073

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

7ZJW|1|L5|G|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_073 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1188

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7ZJW|1|L5|A|1662
7ZJW|1|L5|G|1663
7ZJW|1|L5|U|1664
*
7ZJW|1|L5|A|1777
7ZJW|1|L5|U|1778

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal Protein uL30

Chain LW

60S ribosomal protein eL21

Chain Le

60S ribosomal protein L29