IL_7ZJW_082
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_082 not in the Motif Atlas
- Geometric match to IL_7RQB_037
- Geometric discrepancy: 0.1223
- The information below is about IL_7RQB_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_15861.7
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
7ZJW|1|L5|C|1850
7ZJW|1|L5|G|1851
7ZJW|1|L5|C|1852
7ZJW|1|L5|C|1853
7ZJW|1|L5|C|1854
7ZJW|1|L5|G|1855
7ZJW|1|L5|A|1856
7ZJW|1|L5|U|1857
*
7ZJW|1|L5|G|2003
7ZJW|1|L5|G|2004
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LI
- 60S ribosomal Protein uL30
- Chain LR
- 60S ribosomal protein uL13
- Chain LV
- 60S ribosomal protein eL20
- Chain Li
- 60S ribosomal protein eL33
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