IL_7ZJW_089

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7ZJW|1|L5|G|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_089 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3026

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZJW|1|L5|G|1912
7ZJW|1|L5|U|1913
7ZJW|1|L5|G|1914
7ZJW|1|L5|G|1915
7ZJW|1|L5|C|1916
*
7ZJW|1|L5|G|1928
7ZJW|1|L5|A|1929
7ZJW|1|L5|A|1930
7ZJW|1|L5|U|1931
7ZJW|1|L5|C|1932

Current chains

Chain L5

28S rRNA

Nearby chains