IL_7ZJW_110

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAA*U(OMC)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_110 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3741

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

7ZJW|1|L5|G|2689
7ZJW|1|L5|G|2690
7ZJW|1|L5|G|2691
7ZJW|1|L5|A|2692
7ZJW|1|L5|A|2693
*
7ZJW|1|L5|U|3572
7ZJW|1|L5|OMC|3573
7ZJW|1|L5|C|3574

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LY

60S ribosomal protein L23

Chain LZ

60S ribosomal protein eL24