IL_7ZJW_135

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7ZJW|1|L5|A|4131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_135 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.1449

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7ZJW|1|L5|G|3648
7ZJW|1|L5|A|3649
*
7ZJW|1|L5|U|4130
7ZJW|1|L5|A|4131
7ZJW|1|L5|C|4132
7ZJW|1|L5|C|4133

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2