IL_7ZJW_141
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 7ZJW|1|L5|G|3812, 7ZJW|1|L5|C|3908, 7ZJW|1|L5|U|3909
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_141 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2158
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|L5|G|3810
7ZJW|1|L5|U|3811
7ZJW|1|L5|G|3812
7ZJW|1|L5|A|3813
7ZJW|1|L5|G|3814
7ZJW|1|L5|G|3815
7ZJW|1|L5|C|3816
*
7ZJW|1|L5|G|3907
7ZJW|1|L5|C|3908
7ZJW|1|L5|U|3909
7ZJW|1|L5|C|3910
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein uL2
- Chain LJ
- 60S ribosomal protein eL8
- Chain La
- 60S ribosomal protein uL23
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