IL_7ZJW_146

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_146 not in the Motif Atlas

Homologous match to IL_8C3A_107

Geometric discrepancy: 0.1316

The information below is about IL_8C3A_107

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7ZJW|1|L5|G|3937
7ZJW|1|L5|A|3938
*
7ZJW|1|L5|U|3948
7ZJW|1|L5|A|3949
7ZJW|1|L5|C|3950

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L10

Chain LW

60S ribosomal protein eL21

Chain Le

60S ribosomal protein L29

Chain Lq

60S ribosomal protein eL42