IL_7ZJW_148

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

7ZJW|1|L5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_148 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1933

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7ZJW|1|L5|G|4037
7ZJW|1|L5|A|4038
7ZJW|1|L5|PSU|4039
7ZJW|1|L5|C|4040
*
7ZJW|1|L5|G|4062
7ZJW|1|L5|A|4063
7ZJW|1|L5|C|4064

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein eL21

Chain Le

60S ribosomal protein L29

Chain Lq

60S ribosomal protein eL42