IL_7ZJW_157

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7ZJW|1|L5|A|4264, 7ZJW|1|L5|C|4265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_157 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0874

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7ZJW|1|L5|C|4204
7ZJW|1|L5|U|4205
*
7ZJW|1|L5|A|4263
7ZJW|1|L5|A|4264
7ZJW|1|L5|C|4265
7ZJW|1|L5|G|4266

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain LR

60S ribosomal protein uL13

Chain LY

60S ribosomal protein L23