IL_7ZJW_159

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

7ZJW|1|L5|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_159 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3943

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

7ZJW|1|L5|U|4214
7ZJW|1|L5|U|4215
7ZJW|1|L5|G|4216
*
7ZJW|1|L5|C|4231
7ZJW|1|L5|C|4232
7ZJW|1|L5|A|4233
7ZJW|1|L5|A|4234
7ZJW|1|L5|G|4235

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9

Chain LR

60S ribosomal protein uL13

Chain Lp

60S ribosomal protein L40