3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GCC*GC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_183 not in the Motif Atlas
Geometric match to IL_7RQB_005
Geometric discrepancy: 0.2912
The information below is about IL_7RQB_005
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_76488.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
36

Unit IDs

7ZJW|1|L5|G|4643
7ZJW|1|L5|C|4644
7ZJW|1|L5|C|4645
*
7ZJW|1|L5|G|4655
7ZJW|1|L5|C|4656

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LP
60S ribosomal protein L14

Coloring options:


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