IL_7ZJW_203
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 7ZJW|1|S2|A|517
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_203 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3273
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
7ZJW|1|S2|C|37
7ZJW|1|S2|A|38
7ZJW|1|S2|A|39
7ZJW|1|S2|A|40
*
7ZJW|1|S2|U|515
7ZJW|1|S2|G|516
7ZJW|1|S2|A|517
7ZJW|1|S2|OMC|518
7ZJW|1|S2|G|519
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein eS4
- Chain SU
- 40S ribosomal protein S9
Coloring options: