IL_7ZJW_208

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAG*C(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_208 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1452

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7ZJW|1|S2|C|106
7ZJW|1|S2|A|107
7ZJW|1|S2|G|108
*
7ZJW|1|S2|C|354
7ZJW|1|S2|OMU|355
7ZJW|1|S2|G|356

Current chains

Chain S2

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S8

Chain SW

40S ribosomal protein S11

Chain Si

40S ribosomal protein S23