IL_7ZJW_211

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

7ZJW|1|S2|G|113, 7ZJW|1|S2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_211 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1801

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7ZJW|1|S2|U|112
7ZJW|1|S2|G|113
7ZJW|1|S2|G|114
7ZJW|1|S2|U|115
*
7ZJW|1|S2|A|349
7ZJW|1|S2|A|350

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain ST

40S ribosomal protein S8

Chain SW

40S ribosomal protein S11