IL_7ZJW_212

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|S2|U|115
7ZJW|1|S2|OMU|116
7ZJW|1|S2|C|117
7ZJW|1|S2|C|118
7ZJW|1|S2|PSU|119
7ZJW|1|S2|U|120
7ZJW|1|S2|OMU|121
7ZJW|1|S2|G|122
*
7ZJW|1|S2|C|343
7ZJW|1|S2|A|344
7ZJW|1|S2|U|345
7ZJW|1|S2|U|346
7ZJW|1|S2|C|347
7ZJW|1|S2|G|348
7ZJW|1|S2|A|349

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain ST

40S ribosomal protein S8

Chain SW

40S ribosomal protein S11