IL_7ZJW_221
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_221 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.3529
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59877.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|S2|U|367
7ZJW|1|S2|U|368
7ZJW|1|S2|U|369
7ZJW|1|S2|C|370
7ZJW|1|S2|G|371
7ZJW|1|S2|A|372
*
7ZJW|1|S2|U|394
7ZJW|1|S2|G|395
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LU
- 60S ribosomal protein L19
- Chain ST
- 40S ribosomal protein S8
- Chain SW
- 40S ribosomal protein S11
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