IL_7ZJW_230

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7ZJW|1|S2|U|608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_230 not in the Motif Atlas

Geometric match to IL_4V88_414

Geometric discrepancy: 0.3043

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7ZJW|1|S2|G|607
7ZJW|1|S2|U|608
7ZJW|1|S2|C|609
*
7ZJW|1|S2|G|636
7ZJW|1|S2|C|637

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S30

Chain SO

40S ribosomal protein S3

Chain SU

40S ribosomal protein S9