IL_7ZJW_231

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(PSU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_231 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1964

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

7ZJW|1|S2|C|609
7ZJW|1|S2|PSU|610
7ZJW|1|S2|G|611
*
7ZJW|1|S2|C|634
7ZJW|1|S2|A|635
7ZJW|1|S2|G|636

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S30

Chain SO

40S ribosomal protein S3

Chain Si

40S ribosomal protein S23