IL_7ZJW_238

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCU*AAG

Length

8 nucleotides

Bulged bases

7ZJW|1|S2|U|748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_238 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.3658

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7ZJW|1|S2|C|746
7ZJW|1|S2|C|747
7ZJW|1|S2|U|748
7ZJW|1|S2|C|749
7ZJW|1|S2|U|750
*
7ZJW|1|S2|A|795
7ZJW|1|S2|A|796
7ZJW|1|S2|G|797

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain SS

40S ribosomal protein S7

Chain SW

40S ribosomal protein S11