IL_7ZJW_243

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAAAAA(PSU)(PSU)A*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|S2|G|808
7ZJW|1|S2|A|809
7ZJW|1|S2|A|810
7ZJW|1|S2|A|811
7ZJW|1|S2|A|812
7ZJW|1|S2|A|813
7ZJW|1|S2|A|814
7ZJW|1|S2|PSU|815
7ZJW|1|S2|PSU|816
7ZJW|1|S2|A|817
*
7ZJW|1|S2|U|849
7ZJW|1|S2|A|850
7ZJW|1|S2|C|851
7ZJW|1|S2|C|852
7ZJW|1|S2|G|853
7ZJW|1|S2|C|854
7ZJW|1|S2|A|855
7ZJW|1|S2|G|856
7ZJW|1|S2|C|857

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain SU

40S ribosomal protein S9

Chain SW

40S ribosomal protein S11

Chain Sh

40S ribosomal protein S15a