IL_7ZJW_247

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_247 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.0911

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7ZJW|1|S2|A|923
7ZJW|1|S2|G|924
*
7ZJW|1|S2|C|1020
7ZJW|1|S2|A|1021
7ZJW|1|S2|U|1022
7ZJW|1|S2|U|1023

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S27

Chain SY

40S ribosomal protein uS15

Chain Sh

40S ribosomal protein S15a