IL_7ZJW_248
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAC*GUUUU
- Length
- 9 nucleotides
- Bulged bases
- 7ZJW|1|S2|U|1017
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_248 not in the Motif Atlas
- Geometric match to IL_4V88_429
- Geometric discrepancy: 0.0998
- The information below is about IL_4V88_429
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
7ZJW|1|S2|G|925
7ZJW|1|S2|G|926
7ZJW|1|S2|A|927
7ZJW|1|S2|C|928
*
7ZJW|1|S2|G|1015
7ZJW|1|S2|U|1016
7ZJW|1|S2|U|1017
7ZJW|1|S2|U|1018
7ZJW|1|S2|U|1019
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Lf
- 60S ribosomal protein eL30
- Chain SB
- 40S ribosomal protein S27
- Chain SY
- 40S ribosomal protein uS15
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