IL_7ZJW_253
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGG(PSU)(PSU)C*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_253 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.3045
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7ZJW|1|S2|A|1043
7ZJW|1|S2|G|1044
7ZJW|1|S2|G|1045
7ZJW|1|S2|PSU|1046
7ZJW|1|S2|PSU|1047
7ZJW|1|S2|C|1048
*
7ZJW|1|S2|G|1072
7ZJW|1|S2|U|1073
7ZJW|1|S2|U|1074
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein uL2
- Chain SF
- Ribosomal protein eS26
- Chain SZ
- 40S ribosomal protein uS11
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