IL_7ZJW_261

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7ZJW|1|S2|A|1696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_261 not in the Motif Atlas

Geometric match to IL_4LFB_035

Geometric discrepancy: 0.0768

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7ZJW|1|S2|G|1204
7ZJW|1|S2|A|1205
*
7ZJW|1|S2|U|1695
7ZJW|1|S2|A|1696
7ZJW|1|S2|C|1697

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

Ribosomal protein eS26

Chain SN

40S ribosomal protein uS5