IL_7ZJW_262

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

7ZJW|1|S2|G|1208

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_262 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2687

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7ZJW|1|S2|C|1206
7ZJW|1|S2|G|1207
7ZJW|1|S2|G|1208
7ZJW|1|S2|A|1209
*
7ZJW|1|S2|U|1692
7ZJW|1|S2|PSU|1693
7ZJW|1|S2|G|1694

Current chains

Chain S2

18S rRNA

Nearby chains

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain SF

Ribosomal protein eS26

Chain SN

40S ribosomal protein uS5