3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAG*U(PSU)C
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_264 not in the Motif Atlas
Geometric match to IL_5UNE_004
Geometric discrepancy: 0.2461
The information below is about IL_5UNE_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

7ZJW|1|S2|G|1223
7ZJW|1|S2|A|1224
7ZJW|1|S2|G|1225
*
7ZJW|1|S2|U|1643
7ZJW|1|S2|PSU|1644
7ZJW|1|S2|C|1645

Current chains

Chain S2
18S rRNA

Nearby chains

Chain I
Cripavirus internal ribosome entry site (IRES); CrPV IRES
Chain SQ
Ribosomal protein S5
Chain Sb
40S ribosomal protein uS9

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3523 s