IL_7ZJW_264

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_264 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2461

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7ZJW|1|S2|G|1223
7ZJW|1|S2|A|1224
7ZJW|1|S2|G|1225
*
7ZJW|1|S2|U|1643
7ZJW|1|S2|PSU|1644
7ZJW|1|S2|C|1645

Current chains

Chain S2

18S rRNA

Nearby chains

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain SQ

Ribosomal protein S5

Chain Sb

40S ribosomal protein uS9