IL_7ZJW_288

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_288 not in the Motif Atlas

Homologous match to IL_8P9A_453

Geometric discrepancy: 0.089

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7ZJW|1|S2|G|1703
7ZJW|1|S2|OMC|1704
7ZJW|1|S2|C|1705
7ZJW|1|S2|C|1706
*
7ZJW|1|S2|G|1830
7ZJW|1|S2|U|1831
7ZJW|1|S2|A|1832
7ZJW|1|S2|6MZ|1833
7ZJW|1|S2|C|1834

Current chains

Chain S2

18S rRNA

Nearby chains

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Sl

60S ribosomal protein L41