IL_7ZJW_289

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_289 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1223

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7ZJW|1|S2|G|1707
7ZJW|1|S2|U|1708
7ZJW|1|S2|C|1709
*
7ZJW|1|S2|G|1827
7ZJW|1|S2|U|1828
7ZJW|1|S2|C|1829

Current chains

Chain S2

18S rRNA

Nearby chains

Chain F

Selenocysteine transfer RNA

Chain I

Cripavirus internal ribosome entry site (IRES); CrPV IRES

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Sl

60S ribosomal protein L41