IL_7ZJW_290
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_290 not in the Motif Atlas
- Homologous match to IL_8CRE_469
- Geometric discrepancy: 0.2436
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11399.2
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ZJW|1|S2|C|1709
7ZJW|1|S2|G|1710
7ZJW|1|S2|C|1711
7ZJW|1|S2|U|1712
*
7ZJW|1|S2|A|1823
7ZJW|1|S2|A|1824
7ZJW|1|S2|A|1825
7ZJW|1|S2|A|1826
7ZJW|1|S2|G|1827
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain F
- Selenocysteine transfer RNA
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SE
- 40S ribosomal protein S30
- Chain Si
- 40S ribosomal protein S23
- Chain Sl
- 60S ribosomal protein L41
Coloring options: