IL_7ZJW_323

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_323 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2707

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ZJW|1|L5|PSU|3447
7ZJW|1|L5|C|3448
7ZJW|1|L5|A|3449
7ZJW|1|L5|A2M|3450
7ZJW|1|L5|A|3451
7ZJW|1|L5|G|3452
7ZJW|1|L5|U|3453
*
7ZJW|1|L5|A|3464
7ZJW|1|L5|A|3465
7ZJW|1|L5|PSU|3466
7ZJW|1|L5|G|3467
7ZJW|1|L5|A|3468
7ZJW|1|L5|A|3469
7ZJW|1|L5|G|3470

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain Ll

60S ribosomal protein L36