3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
(PSU)CA(A2M)AGU*AA(PSU)GAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_323 not in the Motif Atlas
Homologous match to IL_8P9A_316
Geometric discrepancy: 0.2707
The information below is about IL_8P9A_316
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_88116.2
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

7ZJW|1|L5|PSU|3447
7ZJW|1|L5|C|3448
7ZJW|1|L5|A|3449
7ZJW|1|L5|A2M|3450
7ZJW|1|L5|A|3451
7ZJW|1|L5|G|3452
7ZJW|1|L5|U|3453
*
7ZJW|1|L5|A|3464
7ZJW|1|L5|A|3465
7ZJW|1|L5|PSU|3466
7ZJW|1|L5|G|3467
7ZJW|1|L5|A|3468
7ZJW|1|L5|A|3469
7ZJW|1|L5|G|3470

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LD
60S ribosomal protein uL2
Chain Ll
60S ribosomal protein L36

Coloring options:


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