3D structure

PDB id
7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAU*(A2M)AG
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZJW_345 not in the Motif Atlas
Homologous match to IL_8C3A_414
Geometric discrepancy: 0.177
The information below is about IL_8C3A_414
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_42997.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
18

Unit IDs

7ZJW|1|S2|C|460
7ZJW|1|S2|A|461
7ZJW|1|S2|U|462
*
7ZJW|1|S2|A2M|469
7ZJW|1|S2|A|470
7ZJW|1|S2|G|471

Current chains

Chain S2
18S rRNA

Nearby chains

Chain E
eEFSec
Chain LY
60S ribosomal protein L23
Chain SR
40S ribosomal protein S6

Coloring options:


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