IL_7ZJW_346
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUA*U(A2M)
- Length
- 5 nucleotides
- Bulged bases
- 7ZJW|1|S2|U|489
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_346 not in the Motif Atlas
- Geometric match to IL_4LFB_014
- Geometric discrepancy: 0.1354
- The information below is about IL_4LFB_014
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
7ZJW|1|S2|U|488
7ZJW|1|S2|U|489
7ZJW|1|S2|A|490
*
7ZJW|1|S2|U|512
7ZJW|1|S2|A2M|513
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain E
- eEFSec
- Chain SP
- 40S ribosomal protein eS4
- Chain SU
- 40S ribosomal protein S9
- Chain Sj
- 40S ribosomal protein S24
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