IL_7ZJW_346

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

7ZJW|1|S2|U|489

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_346 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1354

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7ZJW|1|S2|U|488
7ZJW|1|S2|U|489
7ZJW|1|S2|A|490
*
7ZJW|1|S2|U|512
7ZJW|1|S2|A2M|513

Current chains

Chain S2

18S rRNA

Nearby chains

Chain E

eEFSec

Chain SP

40S ribosomal protein eS4

Chain SU

40S ribosomal protein S9

Chain Sj

40S ribosomal protein S24