IL_7ZJW_351

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

7ZJW|1|S2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_351 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2157

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7ZJW|1|S2|G|926
7ZJW|1|S2|A|927
*
7ZJW|1|S2|U|1016
7ZJW|1|S2|U|1017
7ZJW|1|S2|U|1018

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S27

Chain SY

40S ribosomal protein uS15