IL_7ZJW_353
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC(PSU)*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZJW_353 not in the Motif Atlas
- Homologous match to IL_8P9A_432
- Geometric discrepancy: 0.3357
- The information below is about IL_8P9A_432
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7ZJW|1|S2|C|1231
7ZJW|1|S2|C|1232
7ZJW|1|S2|PSU|1233
*
7ZJW|1|S2|G|1527
7ZJW|1|S2|C|1528
7ZJW|1|S2|G|1529
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain Sa
- 40S ribosomal protein uS19
- Chain Sb
- 40S ribosomal protein uS9
- Chain Sd
- 40S ribosomal protein S18
- Chain Se
- 40S Ribosomal protein eS19
- Chain Sf
- 40S ribosomal protein uS10
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