IL_7ZJW_363

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

7ZJW|1|I|A|182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_363 not in the Motif Atlas

Geometric match to IL_8GLP_154

Geometric discrepancy: 0.3365

The information below is about IL_8GLP_154

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7ZJW|1|I|C|181
7ZJW|1|I|A|182
7ZJW|1|I|G|183
*
7ZJW|1|I|C|194
7ZJW|1|I|G|195

Current chains

Chain I

CrPV IRES

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sa

40S ribosomal protein uS19

Chain Sd

40S ribosomal protein S18