IL_7ZJW_366

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJW_366 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.1422

The information below is about IL_8P9A_397

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7ZJW|1|S2|C|492
7ZJW|1|S2|C|493
7ZJW|1|S2|A|494
7ZJW|1|S2|C|495
7ZJW|1|S2|U|496
*
7ZJW|1|S2|A|509
7ZJW|1|S2|OMG|510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein eS4

Chain SU

40S ribosomal protein S9

Chain Sj

40S ribosomal protein S24