IL_7ZJX_009

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

7ZJX|1|L5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_009 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2675

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

7ZJX|1|L5|C|118
7ZJX|1|L5|G|119
7ZJX|1|L5|A|120
7ZJX|1|L5|A|121
*
7ZJX|1|L5|U|152
7ZJX|1|L5|G|153

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LJ

60S ribosomal protein eL8

Chain LQ

Ribosomal protein L15

Chain Lk

60S ribosomal protein L35