IL_7ZJX_022

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

7ZJX|1|L5|A|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_022 not in the Motif Atlas

Geometric match to IL_3MEI_004

Geometric discrepancy: 0.2918

The information below is about IL_3MEI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7ZJX|1|L5|G|443
7ZJX|1|L5|G|444
7ZJX|1|L5|U|445
7ZJX|1|L5|C|446
*
7ZJX|1|L5|G|1244
7ZJX|1|L5|C|1245
7ZJX|1|L5|U|1246
7ZJX|1|L5|A|1247
7ZJX|1|L5|C|1248

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lh

Ribosomal protein L32

Chain Li

60S ribosomal protein L35a