IL_7ZJX_029

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

7ZJX|1|L5|G|660, 7ZJX|1|L5|A|661, 7ZJX|1|L5|C|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_029 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1789

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

7ZJX|1|L5|G|488
7ZJX|1|L5|G|489
*
7ZJX|1|L5|C|659
7ZJX|1|L5|G|660
7ZJX|1|L5|A|661
7ZJX|1|L5|C|662
7ZJX|1|L5|C|663

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LT

60S ribosomal Protein eL18

Chain Ls

60S ribosomal protein eL28