IL_7ZJX_031

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

7ZJX|1|L5|C|499

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_031 not in the Motif Atlas

Homologous match to IL_8GLP_027

Geometric discrepancy: 0.5497

The information below is about IL_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

7ZJX|1|L5|G|498
7ZJX|1|L5|C|499
7ZJX|1|L5|G|500
*
7ZJX|1|L5|C|650
7ZJX|1|L5|C|651

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4