IL_8GLP_027

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

8GLP|1|L5|G|483, 8GLP|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_027 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.2125

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8GLP|1|L5|G|482
8GLP|1|L5|G|483
8GLP|1|L5|U|484
8GLP|1|L5|C|485
*
8GLP|1|L5|G|671
8GLP|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains