IL_7ZJX_058

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

7ZJX|1|L5|A|1592, 7ZJX|1|L5|A|1593

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_058 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0994

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7ZJX|1|L5|G|1579
7ZJX|1|L5|OMG|1580
7ZJX|1|L5|G|1581
*
7ZJX|1|L5|U|1591
7ZJX|1|L5|A|1592
7ZJX|1|L5|A|1593
7ZJX|1|L5|U|1594
7ZJX|1|L5|C|1595

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain LQ

Ribosomal protein L15

Chain LS

60S ribosomal protein uL22

Chain Lm

Ribosomal protein L37