IL_7ZJX_067

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCC*GAUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZJX_067 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.183

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7ZJX|1|L5|G|1699
7ZJX|1|L5|G|1700
7ZJX|1|L5|C|1701
7ZJX|1|L5|C|1702
*
7ZJX|1|L5|G|1708
7ZJX|1|L5|A|1709
7ZJX|1|L5|U|1710
7ZJX|1|L5|C|1711

Current chains

Chain L5

28S rRNA

Nearby chains